J3_8RDW_030
3D structure
- PDB id
- 8RDW (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of P. urativorans 70S ribosome in complex with hibernation factor Balon and EF-Tu(GDP) (structure 3).
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.74 Å
Loop
- Sequence
- UGG*CUAG*CA
- Length
- 9 nucleotides
- Bulged bases
- 8RDW|1|iN|A|697
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8RDW_030 not in the Motif Atlas
- Geometric match to J3_1KUQ_001
- Geometric discrepancy: 0.094
- The information below is about J3_1KUQ_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_01633.1
- Basepair signature
- cWW-F-cWW-cWW-F
- Number of instances in this motif group
- 4
Unit IDs
8RDW|1|iN|U|629
8RDW|1|iN|G|630
8RDW|1|iN|G|631
*
8RDW|1|iN|C|695
8RDW|1|iN|U|696
8RDW|1|iN|A|697
8RDW|1|iN|G|698
*
8RDW|1|iN|C|798
8RDW|1|iN|A|799
Current chains
- Chain iN
- 16S rRNA
Nearby chains
- Chain BQ
- Small ribosomal subunit protein uS8
- Chain L6
- Small ribosomal subunit protein uS12
- Chain OL
- Small ribosomal subunit protein uS15
- Chain QZ
- Small ribosomal subunit protein uS17
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