J3_8RJB_005

3D structure

PDB id

8RJB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome stalled on a 2-TMD rhodopsin intermediate in complex with Sec61-RAMP4

Experimental method

ELECTRON MICROSCOPY

Resolution

2.69243 Å

Loop

Sequence

GGAUG*CGCUAAGG*CAC

Length

16 nucleotides

Bulged bases

8RJB|1|K|U|1971

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8RJB|1|K|G|1968
8RJB|1|K|G|1969
8RJB|1|K|A|1970
8RJB|1|K|U|1971
8RJB|1|K|G|1972
*
8RJB|1|K|C|1994
8RJB|1|K|G|1995
8RJB|1|K|C|1996
8RJB|1|K|U|1997
8RJB|1|K|A|1998
8RJB|1|K|A|1999
8RJB|1|K|G|2000
8RJB|1|K|G|2001
*
8RJB|1|K|C|2016
8RJB|1|K|A|2017
8RJB|1|K|C|2018

Current chains

Chain K

28S rRNA

Nearby chains