J3_8RJB_010

3D structure

PDB id

8RJB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome stalled on a 2-TMD rhodopsin intermediate in complex with Sec61-RAMP4

Experimental method

ELECTRON MICROSCOPY

Resolution

2.69243 Å

Loop

Sequence

GGGG*CGCUUCUGGCGCCAAG*CGAC

Length

24 nucleotides

Bulged bases

8RJB|1|K|C|4116, 8RJB|1|K|U|4117, 8RJB|1|K|U|4118, 8RJB|1|K|G|4121

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8RJB_010 not in the Motif Atlas

Homologous match to J3_8C3A_009

Geometric discrepancy: 0.2587

The information below is about J3_8C3A_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_02167.1

Basepair signature

cWW-F-F-F-F-F-cWW-F-tHH-tHS-cWW

Number of instances in this motif group

1

Unit IDs

8RJB|1|K|G|4091
8RJB|1|K|G|4092
8RJB|1|K|G|4093
8RJB|1|K|G|4094
*
8RJB|1|K|C|4114
8RJB|1|K|G|4115
8RJB|1|K|C|4116
8RJB|1|K|U|4117
8RJB|1|K|U|4118
8RJB|1|K|C|4119
8RJB|1|K|U|4120
8RJB|1|K|G|4121
8RJB|1|K|G|4122
8RJB|1|K|C|4123
8RJB|1|K|G|4124
8RJB|1|K|C|4125
8RJB|1|K|C|4126
8RJB|1|K|A|4127
8RJB|1|K|A|4128
8RJB|1|K|G|4129
*
8RJB|1|K|C|4155
8RJB|1|K|G|4156
8RJB|1|K|A|4157
8RJB|1|K|C|4158

Current chains

Chain K

28S rRNA

Nearby chains

Chain A

Ribosomal protein L8

Chain G

60S ribosomal protein L7a

Chain X

Ribosomal_L23eN domain-containing protein

Chain Z

60S ribosomal protein L27

Chain c

Large ribosomal subunit protein eL30

Chain g

60S ribosomal protein L34

Chain p

60S ribosomal protein L37a