J3_8RJB_014

3D structure

PDB id

8RJB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome stalled on a 2-TMD rhodopsin intermediate in complex with Sec61-RAMP4

Experimental method

ELECTRON MICROSCOPY

Resolution

2.69243 Å

Loop

Sequence

CAAG*CCCAGCCCGUGGAC*GGUAG

Length

23 nucleotides

Bulged bases

8RJB|1|K|U|224

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8RJB|1|K|C|196
8RJB|1|K|A|197
8RJB|1|K|A|198
8RJB|1|K|G|199
*
8RJB|1|K|C|215
8RJB|1|K|C|216
8RJB|1|K|C|217
8RJB|1|K|A|218
8RJB|1|K|G|219
8RJB|1|K|C|220
8RJB|1|K|C|221
8RJB|1|K|C|222
8RJB|1|K|G|223
8RJB|1|K|U|224
8RJB|1|K|G|225
8RJB|1|K|G|226
8RJB|1|K|A|227
8RJB|1|K|C|228
*
8RJB|1|K|G|240
8RJB|1|K|G|241
8RJB|1|K|U|242
8RJB|1|K|A|243
8RJB|1|K|G|244

Current chains

Chain K

28S rRNA

Nearby chains

Chain C

Large ribosomal subunit protein uL4

Chain Y

Ribosomal protein L26