J3_8RJB_019

3D structure

PDB id

8RJB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome stalled on a 2-TMD rhodopsin intermediate in complex with Sec61-RAMP4

Experimental method

ELECTRON MICROSCOPY

Resolution

2.69243 Å

Loop

Sequence

UCUCC*GCCGG*CCACGCGUCCCCCGCGAG

Length

28 nucleotides

Bulged bases

8RJB|1|K|C|1237, 8RJB|1|K|G|1271, 8RJB|1|K|C|1272

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8RJB|1|K|U|980
8RJB|1|K|C|981
8RJB|1|K|U|982
8RJB|1|K|C|983
8RJB|1|K|C|984
*
8RJB|1|K|G|1070
8RJB|1|K|C|1071
8RJB|1|K|C|1072
8RJB|1|K|G|1073
8RJB|1|K|G|1074
*
8RJB|1|K|C|1236
8RJB|1|K|C|1237
8RJB|1|K|A|1238
8RJB|1|K|C|1239
8RJB|1|K|G|1244
8RJB|1|K|C|1245
8RJB|1|K|G|1246
8RJB|1|K|U|1247
8RJB|1|K|C|1248
8RJB|1|K|C|1249
8RJB|1|K|C|1250
8RJB|1|K|C|1251
8RJB|1|K|C|1252
8RJB|1|K|G|1271
8RJB|1|K|C|1272
8RJB|1|K|G|1273
8RJB|1|K|A|1274
8RJB|1|K|G|1275

Current chains

Chain K

28S rRNA

Nearby chains

Chain C

Large ribosomal subunit protein uL4

Chain E

60S ribosomal protein L6

Chain F

Ribosomal Protein uL30

Chain b

60S ribosomal protein L29