J3_8RJB_026

3D structure

PDB id

8RJB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome stalled on a 2-TMD rhodopsin intermediate in complex with Sec61-RAMP4

Experimental method

ELECTRON MICROSCOPY

Resolution

2.69243 Å

Loop

Sequence

CGGUUG*CCUUC*GCACCGCACGUUCGUG

Length

27 nucleotides

Bulged bases

8RJB|1|K|U|4882, 8RJB|1|K|A|4938, 8RJB|1|K|C|4940, 8RJB|1|K|A|4943, 8RJB|1|K|C|4944, 8RJB|1|K|U|4950

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8RJB|1|K|C|4749
8RJB|1|K|G|4750
8RJB|1|K|G|4751
8RJB|1|K|U|4752
8RJB|1|K|U|4753
8RJB|1|K|G|4754
*
8RJB|1|K|C|4879
8RJB|1|K|C|4880
8RJB|1|K|U|4881
8RJB|1|K|U|4882
8RJB|1|K|C|4883
*
8RJB|1|K|G|4936
8RJB|1|K|C|4937
8RJB|1|K|A|4938
8RJB|1|K|C|4939
8RJB|1|K|C|4940
8RJB|1|K|G|4941
8RJB|1|K|C|4942
8RJB|1|K|A|4943
8RJB|1|K|C|4944
8RJB|1|K|G|4945
8RJB|1|K|U|4946
8RJB|1|K|U|4947
8RJB|1|K|C|4948
8RJB|1|K|G|4949
8RJB|1|K|U|4950
8RJB|1|K|G|4951

Current chains

Chain K

28S rRNA

Nearby chains

Chain E

60S ribosomal protein L6

Chain M

60S ribosomal protein L14

Chain O

60S ribosomal protein L13

Chain f

60S ribosomal protein L35a