J3_8RJD_002

3D structure

PDB id

8RJD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome stalled on a 2-TMD rhodopsin intermediate in complex with Sec61-TRAP, open conformation 2

Experimental method

ELECTRON MICROSCOPY

Resolution

2.78574 Å

Loop

Sequence

UCC*GCCGG*CCACGCGUCCCCCGCG

Length

24 nucleotides

Bulged bases

8RJD|1|K|C|1237, 8RJD|1|K|G|1271, 8RJD|1|K|C|1272

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8RJD|1|K|U|982
8RJD|1|K|C|983
8RJD|1|K|C|984
*
8RJD|1|K|G|1070
8RJD|1|K|C|1071
8RJD|1|K|C|1072
8RJD|1|K|G|1073
8RJD|1|K|G|1074
*
8RJD|1|K|C|1236
8RJD|1|K|C|1237
8RJD|1|K|A|1238
8RJD|1|K|C|1239
8RJD|1|K|G|1244
8RJD|1|K|C|1245
8RJD|1|K|G|1246
8RJD|1|K|U|1247
8RJD|1|K|C|1248
8RJD|1|K|C|1249
8RJD|1|K|C|1250
8RJD|1|K|C|1251
8RJD|1|K|C|1252
8RJD|1|K|G|1271
8RJD|1|K|C|1272
8RJD|1|K|G|1273

Current chains

Chain K

28S rRNA

Nearby chains

Chain C

Large ribosomal subunit protein uL4

Chain E

60S ribosomal protein L6

Chain F

Ribosomal Protein uL30

Chain b

60S ribosomal protein L29