J3_8RJD_005

3D structure

PDB id

8RJD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome stalled on a 2-TMD rhodopsin intermediate in complex with Sec61-TRAP, open conformation 2

Experimental method

ELECTRON MICROSCOPY

Resolution

2.78574 Å

Loop

Sequence

GGAUG*CGCUAAGG*CAC

Length

16 nucleotides

Bulged bases

8RJD|1|K|U|1971

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8RJD|1|K|G|1968
8RJD|1|K|G|1969
8RJD|1|K|A|1970
8RJD|1|K|U|1971
8RJD|1|K|G|1972
*
8RJD|1|K|C|1994
8RJD|1|K|G|1995
8RJD|1|K|C|1996
8RJD|1|K|U|1997
8RJD|1|K|A|1998
8RJD|1|K|A|1999
8RJD|1|K|G|2000
8RJD|1|K|G|2001
*
8RJD|1|K|C|2016
8RJD|1|K|A|2017
8RJD|1|K|C|2018

Current chains

Chain K

28S rRNA

Nearby chains