J3_8RJD_016
3D structure
- PDB id
- 8RJD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the rabbit 80S ribosome stalled on a 2-TMD rhodopsin intermediate in complex with Sec61-TRAP, open conformation 2
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.78574 Å
Loop
- Sequence
- UUGAAAAG*CG*CA
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8RJD_016 not in the Motif Atlas
- Geometric match to J3_4WF9_010
- Geometric discrepancy: 0.0811
- The information below is about J3_4WF9_010
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_68715.1
- Basepair signature
- cWW-tWH-cWW-tSH-F-cWW-F
- Number of instances in this motif group
- 10
Unit IDs
8RJD|1|K|U|380
8RJD|1|K|U|381
8RJD|1|K|G|382
8RJD|1|K|A|383
8RJD|1|K|A|384
8RJD|1|K|A|385
8RJD|1|K|A|386
8RJD|1|K|G|387
*
8RJD|1|K|C|414
8RJD|1|K|G|415
*
8RJD|1|v|C|19
8RJD|1|v|A|20
Current chains
- Chain K
- 28S rRNA
- Chain v
- 5.8S rRNA
Nearby chains
- Chain 1
- Protein transport protein Sec61 subunit alpha isoform 1
- Chain C
- Large ribosomal subunit protein uL4
- Chain Y
- Ribosomal protein L26
- Chain l
- 60S ribosomal protein L39-like
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