J3_8RJD_018

3D structure

PDB id

8RJD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome stalled on a 2-TMD rhodopsin intermediate in complex with Sec61-TRAP, open conformation 2

Experimental method

ELECTRON MICROSCOPY

Resolution

2.78574 Å

Loop

Sequence

CAGUC*GUGCG*CGAUG

Length

15 nucleotides

Bulged bases

8RJD|1|K|C|704

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8RJD|1|K|C|451
8RJD|1|K|A|452
8RJD|1|K|G|453
8RJD|1|K|U|454
8RJD|1|K|C|455
*
8RJD|1|K|G|701
8RJD|1|K|U|702
8RJD|1|K|G|703
8RJD|1|K|C|704
8RJD|1|K|G|705
*
8RJD|1|K|C|1292
8RJD|1|K|G|1293
8RJD|1|K|A|1294
8RJD|1|K|U|1295
8RJD|1|K|G|1296

Current chains

Chain K

28S rRNA

Nearby chains

Chain E

60S ribosomal protein L6

Chain e

Ribosomal protein L32

Chain f

60S ribosomal protein L35a