J3_8RJD_026

3D structure

PDB id

8RJD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome stalled on a 2-TMD rhodopsin intermediate in complex with Sec61-TRAP, open conformation 2

Experimental method

ELECTRON MICROSCOPY

Resolution

2.78574 Å

Loop

Sequence

CGGUUG*CCUUC*GCACCGCACGUUCGUG

Length

27 nucleotides

Bulged bases

8RJD|1|K|U|4882, 8RJD|1|K|A|4938, 8RJD|1|K|C|4940, 8RJD|1|K|A|4943, 8RJD|1|K|C|4944, 8RJD|1|K|U|4950

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8RJD|1|K|C|4749
8RJD|1|K|G|4750
8RJD|1|K|G|4751
8RJD|1|K|U|4752
8RJD|1|K|U|4753
8RJD|1|K|G|4754
*
8RJD|1|K|C|4879
8RJD|1|K|C|4880
8RJD|1|K|U|4881
8RJD|1|K|U|4882
8RJD|1|K|C|4883
*
8RJD|1|K|G|4936
8RJD|1|K|C|4937
8RJD|1|K|A|4938
8RJD|1|K|C|4939
8RJD|1|K|C|4940
8RJD|1|K|G|4941
8RJD|1|K|C|4942
8RJD|1|K|A|4943
8RJD|1|K|C|4944
8RJD|1|K|G|4945
8RJD|1|K|U|4946
8RJD|1|K|U|4947
8RJD|1|K|C|4948
8RJD|1|K|G|4949
8RJD|1|K|U|4950
8RJD|1|K|G|4951

Current chains

Chain K

28S rRNA

Nearby chains

Chain E

60S ribosomal protein L6

Chain M

60S ribosomal protein L14

Chain O

60S ribosomal protein L13a

Chain f

60S ribosomal protein L35a