J3_8RL2_002

3D structure

PDB id

8RL2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human pre-60S - State 5

Experimental method

ELECTRON MICROSCOPY

Resolution

2.84 Å

Loop

Sequence

CAAG*CCCAGCCCGUGGAC*GGUAG

Length

23 nucleotides

Bulged bases

8RL2|1|L5|C|216, 8RL2|1|L5|C|217, 8RL2|1|L5|A|218, 8RL2|1|L5|G|219, 8RL2|1|L5|U|224

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8RL2|1|L5|C|196
8RL2|1|L5|A|197
8RL2|1|L5|A|198
8RL2|1|L5|G|199
*
8RL2|1|L5|C|215
8RL2|1|L5|C|216
8RL2|1|L5|C|217
8RL2|1|L5|A|218
8RL2|1|L5|G|219
8RL2|1|L5|C|220
8RL2|1|L5|C|221
8RL2|1|L5|C|222
8RL2|1|L5|G|223
8RL2|1|L5|U|224
8RL2|1|L5|G|225
8RL2|1|L5|G|226
8RL2|1|L5|A|227
8RL2|1|L5|C|228
*
8RL2|1|L5|G|240
8RL2|1|L5|G|241
8RL2|1|L5|U|242
8RL2|1|L5|A|243
8RL2|1|L5|G|244

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LC

60S ribosomal protein L4

Chain LY

60S ribosomal protein L26