J3_8RO2_001
3D structure
- PDB id
- 8RO2 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Integrative Structure of the human intron lariat Spliceosome (ILS'')
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- GGCCUUUUGG*CAU*ACGCAAAUUC
- Length
- 23 nucleotides
- Bulged bases
- 8RO2|1|2|U|15, 8RO2|1|2|U|17, 8RO2|1|2|U|18, 8RO2|1|6|C|79, 8RO2|1|6|C|81, 8RO2|1|6|A|84
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8RO2|1|2|G|11
8RO2|1|2|G|12
8RO2|1|2|C|13
8RO2|1|2|C|14
8RO2|1|2|U|15
8RO2|1|2|U|16
8RO2|1|2|U|17
8RO2|1|2|U|18
8RO2|1|2|G|19
8RO2|1|2|G|20
*
8RO2|1|6|C|55
8RO2|1|6|A|56
8RO2|1|6|U|57
*
8RO2|1|6|A|78
8RO2|1|6|C|79
8RO2|1|6|G|80
8RO2|1|6|C|81
8RO2|1|6|A|82
8RO2|1|6|A|83
8RO2|1|6|A|84
8RO2|1|6|U|85
8RO2|1|6|U|86
8RO2|1|6|C|87
Current chains
- Chain 2
- U2 snRNA
- Chain 6
- U6 snRNA
Nearby chains
- Chain A
- Pre-mRNA-processing-splicing factor 8
- Chain J
- Crooked neck-like protein 1
- Chain L
- Cell division cycle 5-like protein
- Chain M
- Pre-mRNA-splicing factor SYF2
- Chain R
- SNW domain-containing protein 1
- Chain T
- Pleiotropic regulator 1
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