J3_8RPY_001

3D structure

PDB id

8RPY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli 50S subunit in complex with the antimicrobial peptide Api137

Experimental method

ELECTRON MICROSCOPY

Resolution

2.64 Å

Loop

Sequence

UGAUCUA*UGG*CAAA

Length

14 nucleotides

Bulged bases

8RPY|1|A|U|686, 8RPY|1|A|A|792

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8RPY_001 not in the Motif Atlas

Homologous match to J3_5J7L_038

Geometric discrepancy: 0.092

The information below is about J3_5J7L_038

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_64189.2

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

7

Unit IDs

8RPY|1|A|U|683
8RPY|1|A|G|684
8RPY|1|A|A|685
8RPY|1|A|U|686
8RPY|1|A|C|687
8RPY|1|A|U|688
8RPY|1|A|A|689
*
8RPY|1|A|U|773
8RPY|1|A|G|774
8RPY|1|A|G|775
*
8RPY|1|A|C|791
8RPY|1|A|A|792
8RPY|1|A|A|793
8RPY|1|A|A|794

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 2

Large ribosomal subunit protein bL34

Chain C

Large ribosomal subunit protein uL2

Chain z

Apidaecins type 137