J3_8RPY_015
3D structure
- PDB id
- 8RPY (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Escherichia coli 50S subunit in complex with the antimicrobial peptide Api137
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.64 Å
Loop
- Sequence
- GGAAG*CGCGAUACAG*CGUAC
- Length
- 20 nucleotides
- Bulged bases
- 8RPY|1|A|U|321
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8RPY_015 not in the Motif Atlas
- Homologous match to J3_5J7L_068
- Geometric discrepancy: 0.0827
- The information below is about J3_5J7L_068
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_46299.2
- Basepair signature
- cWW-F-F-F-cHH-cWW-tHS-F-cWW-cSW-tHS-cWW
- Number of instances in this motif group
- 3
Unit IDs
8RPY|1|A|G|297
8RPY|1|A|G|298
8RPY|1|A|A|299
8RPY|1|A|A|300
8RPY|1|A|G|301
*
8RPY|1|A|C|316
8RPY|1|A|G|317
8RPY|1|A|C|318
8RPY|1|A|G|319
8RPY|1|A|A|320
8RPY|1|A|U|321
8RPY|1|A|A|322
8RPY|1|A|C|323
8RPY|1|A|A|324
8RPY|1|A|G|325
*
8RPY|1|A|C|337
8RPY|1|A|G|338
8RPY|1|A|U|339
8RPY|1|A|A|340
8RPY|1|A|C|341
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain E
- Large ribosomal subunit protein uL4
- Chain U
- Large ribosomal subunit protein uL24
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