J3_8RPZ_003

3D structure

PDB id

8RPZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli 50S subunit in complex with the antimicrobial peptide Api88 - conformation I

Experimental method

ELECTRON MICROSCOPY

Resolution

2.44 Å

Loop

Sequence

GGA*UUUAAAGAAA*UCAC

Length

17 nucleotides

Bulged bases

8RPZ|1|A|A|1084, 8RPZ|1|A|A|1088

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8RPZ|1|A|G|1055
8RPZ|1|A|G|1056
8RPZ|1|A|A|1057
*
8RPZ|1|A|U|1081
8RPZ|1|A|U|1082
8RPZ|1|A|U|1083
8RPZ|1|A|A|1084
8RPZ|1|A|A|1085
8RPZ|1|A|A|1086
8RPZ|1|A|G|1087
8RPZ|1|A|A|1088
8RPZ|1|A|A|1089
8RPZ|1|A|A|1090
*
8RPZ|1|A|U|1101
8RPZ|1|A|C|1102
8RPZ|1|A|A|1103
8RPZ|1|A|C|1104

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 4

Large ribosomal subunit protein bL36A