J3_8RPZ_015

3D structure

PDB id

8RPZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli 50S subunit in complex with the antimicrobial peptide Api88 - conformation I

Experimental method

ELECTRON MICROSCOPY

Resolution

2.44 Å

Loop

Sequence

GGAAG*CGCGAUACAG*CGUAC

Length

20 nucleotides

Bulged bases

8RPZ|1|A|U|321

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8RPZ_015 not in the Motif Atlas

Homologous match to J3_5J7L_068

Geometric discrepancy: 0.0801

The information below is about J3_5J7L_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46299.2

Basepair signature

cWW-F-F-F-cHH-cWW-tHS-F-cWW-cSW-tHS-cWW

Number of instances in this motif group

3

Unit IDs

8RPZ|1|A|G|297
8RPZ|1|A|G|298
8RPZ|1|A|A|299
8RPZ|1|A|A|300
8RPZ|1|A|G|301
*
8RPZ|1|A|C|316
8RPZ|1|A|G|317
8RPZ|1|A|C|318
8RPZ|1|A|G|319
8RPZ|1|A|A|320
8RPZ|1|A|U|321
8RPZ|1|A|A|322
8RPZ|1|A|C|323
8RPZ|1|A|A|324
8RPZ|1|A|G|325
*
8RPZ|1|A|C|337
8RPZ|1|A|G|338
8RPZ|1|A|U|339
8RPZ|1|A|A|340
8RPZ|1|A|C|341

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain E

Large ribosomal subunit protein uL4

Chain U

Large ribosomal subunit protein uL24