J3_8RPZ_018
3D structure
- PDB id
- 8RPZ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Escherichia coli 50S subunit in complex with the antimicrobial peptide Api88 - conformation I
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.44 Å
Loop
- Sequence
- GCA*UCAUAGUGAUCC*GCUCAAC
- Length
- 22 nucleotides
- Bulged bases
- 8RPZ|1|A|A|2388, 8RPZ|1|A|U|2390, 8RPZ|1|A|A|2426
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8RPZ_018 not in the Motif Atlas
- Homologous match to J3_5J7L_070
- Geometric discrepancy: 0.0785
- The information below is about J3_5J7L_070
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_20992.1
- Basepair signature
- cWW-F-F-cWW-tHW-tHW-F-cWW-F-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
8RPZ|1|A|G|2282
8RPZ|1|A|C|2283
8RPZ|1|A|A|2284
*
8RPZ|1|A|U|2384
8RPZ|1|A|C|2385
8RPZ|1|A|A|2386
8RPZ|1|A|U|2387
8RPZ|1|A|A|2388
8RPZ|1|A|G|2389
8RPZ|1|A|U|2390
8RPZ|1|A|G|2391
8RPZ|1|A|A|2392
8RPZ|1|A|U|2393
8RPZ|1|A|C|2394
8RPZ|1|A|C|2395
*
8RPZ|1|A|G|2421
8RPZ|1|A|C|2422
8RPZ|1|A|U|2423
8RPZ|1|A|C|2424
8RPZ|1|A|A|2425
8RPZ|1|A|A|2426
8RPZ|1|A|C|2427
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain 1
- Large ribosomal subunit protein bL33
- Chain 3
- Large ribosomal subunit protein bL35
- Chain L
- Large ribosomal subunit protein uL15
- Chain W
- Large ribosomal subunit protein bL27
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