J3_8RQ0_015

3D structure

PDB id

8RQ0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli 50S subunit in complex with the antimicrobial peptide Api88 - conformation II

Experimental method

ELECTRON MICROSCOPY

Resolution

2.44 Å

Loop

Sequence

GGAAG*CGCGAUACAG*CGUAC

Length

20 nucleotides

Bulged bases

8RQ0|1|A|U|321

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8RQ0_015 not in the Motif Atlas

Homologous match to J3_5J7L_068

Geometric discrepancy: 0.0801

The information below is about J3_5J7L_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46299.2

Basepair signature

cWW-F-F-F-cHH-cWW-tHS-F-cWW-cSW-tHS-cWW

Number of instances in this motif group

3

Unit IDs

8RQ0|1|A|G|297
8RQ0|1|A|G|298
8RQ0|1|A|A|299
8RQ0|1|A|A|300
8RQ0|1|A|G|301
*
8RQ0|1|A|C|316
8RQ0|1|A|G|317
8RQ0|1|A|C|318
8RQ0|1|A|G|319
8RQ0|1|A|A|320
8RQ0|1|A|U|321
8RQ0|1|A|A|322
8RQ0|1|A|C|323
8RQ0|1|A|A|324
8RQ0|1|A|G|325
*
8RQ0|1|A|C|337
8RQ0|1|A|G|338
8RQ0|1|A|U|339
8RQ0|1|A|A|340
8RQ0|1|A|C|341

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain E

Large ribosomal subunit protein uL4

Chain U

Large ribosomal subunit protein uL24