3D structure

PDB id
8RQ2 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Escherichia coli 50S subunit in complex with the antimicrobial peptide Api88 - conformation III
Experimental method
ELECTRON MICROSCOPY
Resolution
2.44 Å

Loop

Sequence
GGA*UUUAAAGAAA*UCAC
Length
17 nucleotides
Bulged bases
8RQ2|1|A|A|1084, 8RQ2|1|A|A|1088
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

8RQ2|1|A|G|1055
8RQ2|1|A|G|1056
8RQ2|1|A|A|1057
*
8RQ2|1|A|U|1081
8RQ2|1|A|U|1082
8RQ2|1|A|U|1083
8RQ2|1|A|A|1084
8RQ2|1|A|A|1085
8RQ2|1|A|A|1086
8RQ2|1|A|G|1087
8RQ2|1|A|A|1088
8RQ2|1|A|A|1089
8RQ2|1|A|A|1090
*
8RQ2|1|A|U|1101
8RQ2|1|A|C|1102
8RQ2|1|A|A|1103
8RQ2|1|A|C|1104

Current chains

Chain A
23S ribosomal RNA

Nearby chains

Chain 4
Large ribosomal subunit protein bL36A

Coloring options:

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