J3_8RQ2_003

3D structure

PDB id

8RQ2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli 50S subunit in complex with the antimicrobial peptide Api88 - conformation III

Experimental method

ELECTRON MICROSCOPY

Resolution

2.44 Å

Loop

Sequence

GGA*UUUAAAGAAA*UCAC

Length

17 nucleotides

Bulged bases

8RQ2|1|A|A|1084, 8RQ2|1|A|A|1088

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8RQ2|1|A|G|1055
8RQ2|1|A|G|1056
8RQ2|1|A|A|1057
*
8RQ2|1|A|U|1081
8RQ2|1|A|U|1082
8RQ2|1|A|U|1083
8RQ2|1|A|A|1084
8RQ2|1|A|A|1085
8RQ2|1|A|A|1086
8RQ2|1|A|G|1087
8RQ2|1|A|A|1088
8RQ2|1|A|A|1089
8RQ2|1|A|A|1090
*
8RQ2|1|A|U|1101
8RQ2|1|A|C|1102
8RQ2|1|A|A|1103
8RQ2|1|A|C|1104

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 4

Large ribosomal subunit protein bL36A