J3_8RQ2_008
3D structure
- PDB id
- 8RQ2 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Escherichia coli 50S subunit in complex with the antimicrobial peptide Api88 - conformation III
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.44 Å
Loop
- Sequence
- CAUC*GUA*UUUAAAG
- Length
- 14 nucleotides
- Bulged bases
- 8RQ2|1|A|A|2518, 8RQ2|1|A|U|2519
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8RQ2_008 not in the Motif Atlas
- Homologous match to J3_5J7L_046
- Geometric discrepancy: 0.108
- The information below is about J3_5J7L_046
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_32601.5
- Basepair signature
- cWW-tWH-cHW-F-cWW-tSS-F-cWW
- Number of instances in this motif group
- 4
Unit IDs
8RQ2|1|A|C|2517
8RQ2|1|A|A|2518
8RQ2|1|A|U|2519
8RQ2|1|A|C|2520
*
8RQ2|1|A|G|2545
8RQ2|1|A|U|2546
8RQ2|1|A|A|2547
*
8RQ2|1|A|U|2561
8RQ2|1|A|U|2562
8RQ2|1|A|U|2563
8RQ2|1|A|A|2564
8RQ2|1|A|A|2565
8RQ2|1|A|A|2566
8RQ2|1|A|G|2567
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain D
- Large ribosomal subunit protein uL3
- Chain K
- Large ribosomal subunit protein uL14
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