J3_8RQ2_015

3D structure

PDB id

8RQ2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli 50S subunit in complex with the antimicrobial peptide Api88 - conformation III

Experimental method

ELECTRON MICROSCOPY

Resolution

2.44 Å

Loop

Sequence

GGAAG*CGCGAUACAG*CGUAC

Length

20 nucleotides

Bulged bases

8RQ2|1|A|U|321

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8RQ2_015 not in the Motif Atlas

Homologous match to J3_5J7L_068

Geometric discrepancy: 0.0801

The information below is about J3_5J7L_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46299.2

Basepair signature

cWW-F-F-F-cHH-cWW-tHS-F-cWW-cSW-tHS-cWW

Number of instances in this motif group

3

Unit IDs

8RQ2|1|A|G|297
8RQ2|1|A|G|298
8RQ2|1|A|A|299
8RQ2|1|A|A|300
8RQ2|1|A|G|301
*
8RQ2|1|A|C|316
8RQ2|1|A|G|317
8RQ2|1|A|C|318
8RQ2|1|A|G|319
8RQ2|1|A|A|320
8RQ2|1|A|U|321
8RQ2|1|A|A|322
8RQ2|1|A|C|323
8RQ2|1|A|A|324
8RQ2|1|A|G|325
*
8RQ2|1|A|C|337
8RQ2|1|A|G|338
8RQ2|1|A|U|339
8RQ2|1|A|A|340
8RQ2|1|A|C|341

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain E

Large ribosomal subunit protein uL4

Chain U

Large ribosomal subunit protein uL24