J3_8RRI_001

3D structure

PDB id

8RRI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human mitochondrial ribosome in complex with antibiotic tigecycline

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

CUAG*CAAUAGAUAUAGUAC*GGAAAG

Length

25 nucleotides

Bulged bases

8RRI|1|A|U|1774

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8RRI|1|A|C|1678
8RRI|1|A|U|1679
8RRI|1|A|A|1680
8RRI|1|A|G|1681
*
8RRI|1|A|C|1771
8RRI|1|A|A|1772
8RRI|1|A|A|1773
8RRI|1|A|U|1774
8RRI|1|A|A|1775
8RRI|1|A|G|1776
8RRI|1|A|A|1777
8RRI|1|A|U|1778
8RRI|1|A|A|1779
8RRI|1|A|U|1780
8RRI|1|A|A|1781
8RRI|1|A|G|1782
8RRI|1|A|U|1783
8RRI|1|A|A|1784
8RRI|1|A|C|1785
*
8RRI|1|A|G|1792
8RRI|1|A|G|1793
8RRI|1|A|A|1794
8RRI|1|A|A|1795
8RRI|1|A|A|1796
8RRI|1|A|G|1797

Current chains

Chain A

16S mitochondrial rRNA

Nearby chains

Chain 2

39S ribosomal protein L34, mitochondrial

Chain 9

39S ribosomal protein L41, mitochondrial

Chain F

39S ribosomal protein L4, mitochondrial

Chain R

39S ribosomal protein L20, mitochondrial

Chain U

Large ribosomal subunit protein uL23m

Chain V

39S ribosomal protein L24, mitochondrial

Chain Y

39S ribosomal protein L47, mitochondrial

Chain c

39S ribosomal protein L44, mitochondrial

Chain d

39S ribosomal protein L45, mitochondrial

Chain i

39S ribosomal protein L51, mitochondrial