J3_8RRI_006

3D structure

PDB id

8RRI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human mitochondrial ribosome in complex with antibiotic tigecycline

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

UAAGCCUG*CAACC*GCA

Length

16 nucleotides

Bulged bases

8RRI|1|A|A|2425

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8RRI|1|A|U|2336
8RRI|1|A|A|2337
8RRI|1|A|A|2338
8RRI|1|A|G|2339
8RRI|1|A|C|2340
8RRI|1|A|C|2341
8RRI|1|A|U|2342
8RRI|1|A|G|2343
*
8RRI|1|A|C|2423
8RRI|1|A|A|2424
8RRI|1|A|A|2425
8RRI|1|A|C|2426
8RRI|1|A|C|2427
*
8RRI|1|A|G|2436
8RRI|1|A|C|2437
8RRI|1|A|A|2438

Current chains

Chain A

16S mitochondrial rRNA

Nearby chains

Chain 2

39S ribosomal protein L34, mitochondrial

Chain 9

39S ribosomal protein L41, mitochondrial

Chain U

Large ribosomal subunit protein uL23m

Chain s

39S ribosomal protein S30, mitochondrial