J3_8RRI_011

3D structure

PDB id

8RRI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human mitochondrial ribosome in complex with antibiotic tigecycline

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

GAUU*AUUAACCU*AGC

Length

15 nucleotides

Bulged bases

8RRI|1|AA|A|688, 8RRI|1|AA|C|828

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8RRI|1|AA|G|687
8RRI|1|AA|A|688
8RRI|1|AA|U|689
8RRI|1|AA|U|690
*
8RRI|1|AA|A|823
8RRI|1|AA|U|824
8RRI|1|AA|U|825
8RRI|1|AA|A|826
8RRI|1|AA|A|827
8RRI|1|AA|C|828
8RRI|1|AA|C|829
8RRI|1|AA|U|830
*
8RRI|1|AA|A|856
8RRI|1|AA|G|857
8RRI|1|AA|C|858

Current chains

Chain AA

12S mitochondrial rRNA

Nearby chains

Chain AJ

28S ribosomal protein S12, mitochondrial

Chain AM

28S ribosomal protein S16, mitochondrial

Chain AT

Small ribosomal subunit protein mS25