J3_8RRI_014

3D structure

PDB id

8RRI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human mitochondrial ribosome in complex with antibiotic tigecycline

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

AGGA*UAC*GGAU

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8RRI_014 not in the Motif Atlas

Homologous match to J3_5J7L_005

Geometric discrepancy: 0.086

The information below is about J3_5J7L_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_52655.4

Basepair signature

cWW-tSH-cWW-F-cWW-cWW

Number of instances in this motif group

4

Unit IDs

8RRI|1|AA|A|1198
8RRI|1|AA|G|1199
8RRI|1|AA|G|1200
8RRI|1|AA|A|1201
*
8RRI|1|AA|U|1364
8RRI|1|AA|A|1365
8RRI|1|AA|C|1366
*
8RRI|1|AA|G|1421
8RRI|1|AA|G|1422
8RRI|1|AA|A|1423
8RRI|1|AA|U|1424

Current chains

Chain AA

12S mitochondrial rRNA

Nearby chains

Chain AF

28S ribosomal protein S7, mitochondrial

Chain AG

28S ribosomal protein S9, mitochondrial

Chain Ax

Transfer RNA; tRNA