J3_8RW1_002

3D structure

PDB id

8RW1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a yeast 48S-AUC preinitiation complex in closed conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.35 Å

Loop

Sequence

AGAUAAAAAAUCAAUG*CUCCUUG*CAU

Length

26 nucleotides

Bulged bases

8RW1|1|2|U|237

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8RW1|1|2|A|212
8RW1|1|2|G|213
8RW1|1|2|A|214
8RW1|1|2|U|215
8RW1|1|2|A|216
8RW1|1|2|A|217
8RW1|1|2|A|218
8RW1|1|2|A|219
8RW1|1|2|A|220
8RW1|1|2|A|221
8RW1|1|2|U|222
8RW1|1|2|C|223
8RW1|1|2|A|224
8RW1|1|2|A|225
8RW1|1|2|U|226
8RW1|1|2|G|227
*
8RW1|1|2|C|236
8RW1|1|2|U|237
8RW1|1|2|C|238
8RW1|1|2|C|239
8RW1|1|2|U|240
8RW1|1|2|U|241
8RW1|1|2|G|242
*
8RW1|1|2|C|249
8RW1|1|2|A|250
8RW1|1|2|U|251

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain E

40S ribosomal protein S4

Chain G

Small ribosomal subunit protein eS6

Chain I

40S ribosomal protein S8

Chain L

KLLA0A10483p