J3_8RW1_004

3D structure

PDB id

8RW1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a yeast 48S-AUC preinitiation complex in closed conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.35 Å

Loop

Sequence

UAGAG*CAG*UCGAAUA

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8RW1|1|2|U|759
8RW1|1|2|A|760
8RW1|1|2|G|761
8RW1|1|2|A|762
8RW1|1|2|G|763
*
8RW1|1|2|C|773
8RW1|1|2|A|774
8RW1|1|2|G|775
*
8RW1|1|2|U|784
8RW1|1|2|C|785
8RW1|1|2|G|786
8RW1|1|2|A|787
8RW1|1|2|A|788
8RW1|1|2|U|789
8RW1|1|2|A|790

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain E

40S ribosomal protein S4

Chain J

KLLA0E23673p

Chain Y

40S ribosomal protein S24