J3_8RW1_011
3D structure
- PDB id
- 8RW1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a yeast 48S-AUC preinitiation complex in closed conformation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.35 Å
Loop
- Sequence
- UCUUAG*CGAGAC*GCAAUA
- Length
- 18 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8RW1_011 not in the Motif Atlas
- Homologous match to J3_8P9A_080
- Geometric discrepancy: 0.3613
- The information below is about J3_8P9A_080
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_17077.2
- Basepair signature
- cWW-F-F-F-F-F-F-F-F-cWW-cWW-F-F-F-F
- Number of instances in this motif group
- 3
Unit IDs
8RW1|1|2|U|1282
8RW1|1|2|C|1283
8RW1|1|2|U|1284
8RW1|1|2|U|1285
8RW1|1|2|A|1286
8RW1|1|2|G|1287
*
8RW1|1|2|C|1326
8RW1|1|2|G|1327
8RW1|1|2|A|1328
8RW1|1|2|G|1329
8RW1|1|2|A|1330
8RW1|1|2|C|1331
*
8RW1|1|2|G|1417
8RW1|1|2|C|1418
8RW1|1|2|A|1419
8RW1|1|2|A|1420
8RW1|1|2|U|1421
8RW1|1|2|A|1422
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain C
- Small ribosomal subunit protein uS5
- Chain D
- 40S ribosomal protein S3
- Chain Q
- Small ribosomal subunit protein uS9
- Chain R
- KLLA0B01474p
- Chain U
- Small ribosomal subunit protein uS10
- Chain d
- Small ribosomal subunit protein uS14
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