J3_8RW1_012

3D structure

PDB id

8RW1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a yeast 48S-AUC preinitiation complex in closed conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.35 Å

Loop

Sequence

GUG*UGUC*GAUAAC

Length

13 nucleotides

Bulged bases

8RW1|1|2|A|1320

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8RW1|1|2|G|1291
8RW1|1|2|U|1292
8RW1|1|2|G|1293
*
8RW1|1|2|U|1302
8RW1|1|2|G|1303
8RW1|1|2|U|1304
8RW1|1|2|C|1305
*
8RW1|1|2|G|1317
8RW1|1|2|A|1318
8RW1|1|2|U|1319
8RW1|1|2|A|1320
8RW1|1|2|A|1321
8RW1|1|2|C|1322

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain A

Small ribosomal subunit protein uS2

Chain C

Small ribosomal subunit protein uS5

Chain R

KLLA0B01474p