J3_8S8H_003
3D structure
- PDB id
- 8S8H (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a yeast 48S-AUC preinitiation complex in closed conformation (model py48S-AUC-2.2)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4 Å
Loop
- Sequence
- UGA*UAAUAG*CAUUA
- Length
- 14 nucleotides
- Bulged bases
- 8S8H|1|2|U|863
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8S8H_003 not in the Motif Atlas
- Homologous match to J3_8P9A_072
- Geometric discrepancy: 0.1553
- The information below is about J3_8P9A_072
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_17385.6
- Basepair signature
- cWW-F-cWW-cWW-F-F-F-cWW
- Number of instances in this motif group
- 6
Unit IDs
8S8H|1|2|U|632
8S8H|1|2|G|633
8S8H|1|2|A|634
*
8S8H|1|2|U|860
8S8H|1|2|A|861
8S8H|1|2|A|862
8S8H|1|2|U|863
8S8H|1|2|A|864
8S8H|1|2|G|865
*
8S8H|1|2|C|961
8S8H|1|2|A|962
8S8H|1|2|U|963
8S8H|1|2|U|964
8S8H|1|2|A|965
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain H
- 40S ribosomal protein S7
- Chain L
- KLLA0A10483p
- Chain N
- KLLA0F18040p
- Chain W
- Small ribosomal subunit protein uS8
- Chain X
- KLLA0B11231p
- Chain b
- 40S ribosomal protein S27
Coloring options: