J3_8S8H_004

3D structure

PDB id

8S8H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a yeast 48S-AUC preinitiation complex in closed conformation (model py48S-AUC-2.2)

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

UAGAG*CAG*UCGAAUA

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8S8H|1|2|U|759
8S8H|1|2|A|760
8S8H|1|2|G|761
8S8H|1|2|A|762
8S8H|1|2|G|763
*
8S8H|1|2|C|773
8S8H|1|2|A|774
8S8H|1|2|G|775
*
8S8H|1|2|U|784
8S8H|1|2|C|785
8S8H|1|2|G|786
8S8H|1|2|A|787
8S8H|1|2|A|788
8S8H|1|2|U|789
8S8H|1|2|A|790

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain E

40S ribosomal protein S4

Chain J

KLLA0E23673p

Chain Y

40S ribosomal protein S24