J3_8S8H_012

3D structure

PDB id

8S8H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a yeast 48S-AUC preinitiation complex in closed conformation (model py48S-AUC-2.2)

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

GUG*UGUC*GAUAAC

Length

13 nucleotides

Bulged bases

8S8H|1|2|A|1320

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8S8H|1|2|G|1291
8S8H|1|2|U|1292
8S8H|1|2|G|1293
*
8S8H|1|2|U|1302
8S8H|1|2|G|1303
8S8H|1|2|U|1304
8S8H|1|2|C|1305
*
8S8H|1|2|G|1317
8S8H|1|2|A|1318
8S8H|1|2|U|1319
8S8H|1|2|A|1320
8S8H|1|2|A|1321
8S8H|1|2|C|1322

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain A

Small ribosomal subunit protein uS2

Chain C

Small ribosomal subunit protein uS5

Chain R

KLLA0B01474p