J3_8S8J_001

3D structure

PDB id

8S8J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a yeast 48S-AUC preinitiation complex in closed conformation (model py48S-AUC-eIF5)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

UCAAAG*CGCAAAU*AG(PSU)GACAA

Length

21 nucleotides

Bulged bases

8S8J|1|2|A|467

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8S8J|1|2|U|37
8S8J|1|2|C|38
8S8J|1|2|A|39
8S8J|1|2|A|40
8S8J|1|2|A|41
8S8J|1|2|G|42
*
8S8J|1|2|C|432
8S8J|1|2|G|433
8S8J|1|2|C|434
8S8J|1|2|A|435
8S8J|1|2|A|436
8S8J|1|2|A|437
8S8J|1|2|U|438
*
8S8J|1|2|A|463
8S8J|1|2|G|464
8S8J|1|2|PSU|465
8S8J|1|2|G|466
8S8J|1|2|A|467
8S8J|1|2|C|468
8S8J|1|2|A|469
8S8J|1|2|A|470

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain E

40S ribosomal protein S4

Chain J

KLLA0E23673p

Chain X

KLLA0B11231p

Chain Y

40S ribosomal protein S24