J3_8SCB_002

3D structure

PDB id

8SCB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Terminating ribosome with SRI-41315

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

UCC*GCCGG*CCACGCG

Length

15 nucleotides

Bulged bases

8SCB|1|5|C|1237, 8SCB|1|5|G|1271, 8SCB|1|5|C|1272

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8SCB|1|5|U|982
8SCB|1|5|C|983
8SCB|1|5|C|984
*
8SCB|1|5|G|1070
8SCB|1|5|C|1071
8SCB|1|5|C|1072
8SCB|1|5|G|1073
8SCB|1|5|G|1074
*
8SCB|1|5|C|1236
8SCB|1|5|C|1237
8SCB|1|5|A|1238
8SCB|1|5|C|1239
8SCB|1|5|G|1271
8SCB|1|5|C|1272
8SCB|1|5|G|1273

Current chains

Chain 5

28S_rRNA

Nearby chains

Chain C

60S ribosomal protein L4

Chain E

60S ribosomal protein L6

Chain F

60S ribosomal protein L7