J3_8SCB_036

3D structure

PDB id

8SCB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Terminating ribosome with SRI-41315

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

CGGUUG*CCUUC*GCACCGCACGUUCGUG

Length

27 nucleotides

Bulged bases

8SCB|1|5|U|4882, 8SCB|1|5|A|4938, 8SCB|1|5|C|4940, 8SCB|1|5|A|4943, 8SCB|1|5|C|4944, 8SCB|1|5|U|4950

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8SCB|1|5|C|4749
8SCB|1|5|G|4750
8SCB|1|5|G|4751
8SCB|1|5|U|4752
8SCB|1|5|U|4753
8SCB|1|5|G|4754
*
8SCB|1|5|C|4879
8SCB|1|5|C|4880
8SCB|1|5|U|4881
8SCB|1|5|U|4882
8SCB|1|5|C|4883
*
8SCB|1|5|G|4936
8SCB|1|5|C|4937
8SCB|1|5|A|4938
8SCB|1|5|C|4939
8SCB|1|5|C|4940
8SCB|1|5|G|4941
8SCB|1|5|C|4942
8SCB|1|5|A|4943
8SCB|1|5|C|4944
8SCB|1|5|G|4945
8SCB|1|5|U|4946
8SCB|1|5|U|4947
8SCB|1|5|C|4948
8SCB|1|5|G|4949
8SCB|1|5|U|4950
8SCB|1|5|G|4951

Current chains

Chain 5

28S_rRNA

Nearby chains

Chain E

60S ribosomal protein L6

Chain M

60S ribosomal protein L14

Chain O

uL13

Chain f

eL33