J3_8SUP_004

3D structure

PDB id

8SUP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 48S translation initiation complex assembled on the encephalomyocarditis virus IRES

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UGGA*UUAAGAG*CAUUA

Length

16 nucleotides

Bulged bases

8SUP|1|2|G|921

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8SUP|1|2|U|682
8SUP|1|2|G|683
8SUP|1|2|G|684
8SUP|1|2|A|685
*
8SUP|1|2|U|917
8SUP|1|2|U|918
8SUP|1|2|A|919
8SUP|1|2|A|920
8SUP|1|2|G|921
8SUP|1|2|A|922
8SUP|1|2|G|923
*
8SUP|1|2|C|1019
8SUP|1|2|A|1020
8SUP|1|2|U|1021
8SUP|1|2|U|1022
8SUP|1|2|A|1023

Current chains

Chain 2

18S rRNA

Nearby chains

Chain I

eS7

Chain M

uS17

Chain O

uS15

Chain X

uS8

Chain Y

uS12

Chain c

eS27