J3_8SUP_007

3D structure

PDB id

8SUP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 48S translation initiation complex assembled on the encephalomyocarditis virus IRES

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CCG*UUCCG*CAAAG

Length

13 nucleotides

Bulged bases

8SUP|1|2|C|1138

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8SUP|1|2|C|1094
8SUP|1|2|C|1095
8SUP|1|2|G|1096
*
8SUP|1|2|U|1136
8SUP|1|2|U|1137
8SUP|1|2|C|1138
8SUP|1|2|C|1139
8SUP|1|2|G|1140
*
8SUP|1|2|C|1147
8SUP|1|2|A|1148
8SUP|1|2|A|1149
8SUP|1|2|A|1150
8SUP|1|2|G|1151

Current chains

Chain 2

18S rRNA

Nearby chains

Chain B

uS2 (SA)

Chain W

eS21

Chain X

uS8

Chain b

eS26

Chain c

eS27