J3_8SUP_008

3D structure

PDB id

8SUP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 48S translation initiation complex assembled on the encephalomyocarditis virus IRES

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CCAG*CCAGUAA*UGAUUAAG

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8SUP|1|2|C|1218
8SUP|1|2|C|1219
8SUP|1|2|A|1220
8SUP|1|2|G|1221
*
8SUP|1|2|C|1645
8SUP|1|2|C|1646
8SUP|1|2|A|1647
8SUP|1|2|G|1648
8SUP|1|2|U|1649
8SUP|1|2|A|1650
8SUP|1|2|A|1651
*
8SUP|1|2|U|1673
8SUP|1|2|G|1674
8SUP|1|2|A|1675
8SUP|1|2|U|1676
8SUP|1|2|U|1677
8SUP|1|2|A|1678
8SUP|1|2|A|1679
8SUP|1|2|G|1680

Current chains

Chain 2

18S rRNA

Nearby chains

Chain G

uS7

Chain R

uS9

Chain d

eS28