J3_8SUP_009

3D structure

PDB id

8SUP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 48S translation initiation complex assembled on the encephalomyocarditis virus IRES

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UGGA*UAC*GGAA

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8SUP_009 not in the Motif Atlas

Homologous match to J3_9H3G_036

Geometric discrepancy: 0.0886

The information below is about J3_9H3G_036

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_44359.4

Basepair signature

cWW-tSH-cWW-F-cWW-cWW

Number of instances in this motif group

7

Unit IDs

8SUP|1|2|U|1225
8SUP|1|2|G|1226
8SUP|1|2|G|1227
8SUP|1|2|A|1228
*
8SUP|1|2|U|1530
8SUP|1|2|A|1531
8SUP|1|2|C|1532
*
8SUP|1|2|G|1638
8SUP|1|2|G|1639
8SUP|1|2|A|1640
8SUP|1|2|A|1641

Current chains

Chain 2

18S rRNA

Nearby chains

Chain G

uS7

Chain R

uS9

Chain T

uS13

Chain U

eS19

Chain i

Transfer RNA; tRNA

Chain j

Eukaryotic translation initiation factor 2 subunit 1