J3_8SUP_010

3D structure

PDB id

8SUP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 48S translation initiation complex assembled on the encephalomyocarditis virus IRES

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CUUAAUUU*GGGAAACCUCAC*GGCUG

Length

25 nucleotides

Bulged bases

8SUP|1|2|G|1256, 8SUP|1|2|A|1258, 8SUP|1|2|A|1260

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8SUP|1|2|C|1237
8SUP|1|2|U|1238
8SUP|1|2|U|1239
8SUP|1|2|A|1240
8SUP|1|2|A|1241
8SUP|1|2|U|1242
8SUP|1|2|U|1243
8SUP|1|2|U|1244
*
8SUP|1|2|G|1255
8SUP|1|2|G|1256
8SUP|1|2|G|1257
8SUP|1|2|A|1258
8SUP|1|2|A|1259
8SUP|1|2|A|1260
8SUP|1|2|C|1261
8SUP|1|2|C|1262
8SUP|1|2|U|1263
8SUP|1|2|C|1264
8SUP|1|2|A|1265
8SUP|1|2|C|1266
*
8SUP|1|2|G|1516
8SUP|1|2|G|1517
8SUP|1|2|C|1518
8SUP|1|2|U|1519
8SUP|1|2|G|1520

Current chains

Chain 2

18S rRNA

Nearby chains

Chain 3

EMCV mRNA

Chain Q

uS19

Chain T

uS13

Chain V

uS10

Chain e

uS14