J3_8SUP_011

3D structure

PDB id

8SUP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 48S translation initiation complex assembled on the encephalomyocarditis virus IRES

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CCGGAC*GGGUG*UUAGAUG

Length

18 nucleotides

Bulged bases

8SUP|1|2|G|1274, 8SUP|1|2|G|1507, 8SUP|1|2|U|1509

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8SUP|1|2|C|1272
8SUP|1|2|C|1273
8SUP|1|2|G|1274
8SUP|1|2|G|1275
8SUP|1|2|A|1276
8SUP|1|2|C|1277
*
8SUP|1|2|G|1320
8SUP|1|2|G|1321
8SUP|1|2|G|1322
8SUP|1|2|U|1323
8SUP|1|2|G|1324
*
8SUP|1|2|U|1504
8SUP|1|2|U|1505
8SUP|1|2|A|1506
8SUP|1|2|G|1507
8SUP|1|2|A|1508
8SUP|1|2|U|1509
8SUP|1|2|G|1510

Current chains

Chain 2

18S rRNA

Nearby chains

Chain L

eS10

Chain e

uS14

Chain g

eS31