J3_8SUP_013

3D structure

PDB id

8SUP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 48S translation initiation complex assembled on the encephalomyocarditis virus IRES

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UG*UGUC*GAUAA

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8SUP|1|2|U|1350
8SUP|1|2|G|1351
*
8SUP|1|2|U|1360
8SUP|1|2|G|1361
8SUP|1|2|U|1362
8SUP|1|2|C|1363
*
8SUP|1|2|G|1375
8SUP|1|2|A|1376
8SUP|1|2|U|1377
8SUP|1|2|A|1378
8SUP|1|2|A|1379

Current chains

Chain 2

18S rRNA

Nearby chains

Chain B

uS2 (SA)

Chain D

40S ribosomal protein S2

Chain S

eS17