J3_8SYL_007

3D structure

PDB id

8SYL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Escherichia coli 70S ribosome in complex with amikacin, mRNA, and A-, P-, and E-site tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CAUC*GUA*UUUAAAG

Length

14 nucleotides

Bulged bases

8SYL|1|A|A|2518, 8SYL|1|A|U|2519

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8SYL_007 not in the Motif Atlas

Homologous match to J3_5J7L_046

Geometric discrepancy: 0.0673

The information below is about J3_5J7L_046

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32601.5

Basepair signature

cWW-tWH-cHW-F-cWW-tSS-F-cWW

Number of instances in this motif group

4

Unit IDs

8SYL|1|A|C|2517
8SYL|1|A|A|2518
8SYL|1|A|U|2519
8SYL|1|A|C|2520
*
8SYL|1|A|G|2545
8SYL|1|A|U|2546
8SYL|1|A|A|2547
*
8SYL|1|A|U|2561
8SYL|1|A|U|2562
8SYL|1|A|U|2563
8SYL|1|A|A|2564
8SYL|1|A|A|2565
8SYL|1|A|A|2566
8SYL|1|A|G|2567

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain M

50S ribosomal protein L14