J3_8SYL_011

3D structure

PDB id

8SYL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Escherichia coli 70S ribosome in complex with amikacin, mRNA, and A-, P-, and E-site tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CAAG*CUAGUAA*UGAAUACG

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8SYL_011 not in the Motif Atlas

Homologous match to J3_4LFB_002

Geometric discrepancy: 0.089

The information below is about J3_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_25303.4

Basepair signature

cWW-F-F-cSS-F-cWW-tWW-F-tWH-F-tHS-cSH-cWW

Number of instances in this motif group

4

Unit IDs

8SYL|1|a|C|936
8SYL|1|a|A|937
8SYL|1|a|A|938
8SYL|1|a|G|939
*
8SYL|1|a|C|1344
8SYL|1|a|U|1345
8SYL|1|a|A|1346
8SYL|1|a|G|1347
8SYL|1|a|U|1348
8SYL|1|a|A|1349
8SYL|1|a|A|1350
*
8SYL|1|a|U|1372
8SYL|1|a|G|1373
8SYL|1|a|A|1374
8SYL|1|a|A|1375
8SYL|1|a|U|1376
8SYL|1|a|A|1377
8SYL|1|a|C|1378
8SYL|1|a|G|1379

Current chains

Chain a

16S Ribosomal RNA

Nearby chains

Chain g

30S ribosomal protein S7

Chain i

30S ribosomal protein S9

Chain y

Transfer RNA; tRNA