J3_8SYL_023

3D structure

PDB id

8SYL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Escherichia coli 70S ribosome in complex with amikacin, mRNA, and A-, P-, and E-site tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GGAAG*CGCGAUACAG*CGUAC

Length

20 nucleotides

Bulged bases

8SYL|1|A|U|321

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8SYL_023 not in the Motif Atlas

Homologous match to J3_5J7L_068

Geometric discrepancy: 0.0438

The information below is about J3_5J7L_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46299.2

Basepair signature

cWW-F-F-F-cHH-cWW-tHS-F-cWW-cSW-tHS-cWW

Number of instances in this motif group

3

Unit IDs

8SYL|1|A|G|297
8SYL|1|A|G|298
8SYL|1|A|A|299
8SYL|1|A|A|300
8SYL|1|A|G|301
*
8SYL|1|A|C|316
8SYL|1|A|G|317
8SYL|1|A|C|318
8SYL|1|A|G|319
8SYL|1|A|A|320
8SYL|1|A|U|321
8SYL|1|A|A|322
8SYL|1|A|C|323
8SYL|1|A|A|324
8SYL|1|A|G|325
*
8SYL|1|A|C|337
8SYL|1|A|G|338
8SYL|1|A|U|339
8SYL|1|A|A|340
8SYL|1|A|C|341

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain E

50S ribosomal protein L4

Chain W

50S ribosomal protein L24