J3_8SYL_034

3D structure

PDB id

8SYL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Escherichia coli 70S ribosome in complex with amikacin, mRNA, and A-, P-, and E-site tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CUUGACAU*ACAG*CUUACG

Length

18 nucleotides

Bulged bases

8SYL|1|a|C|1214

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8SYL_034 not in the Motif Atlas

Homologous match to J3_5J7L_053

Geometric discrepancy: 0.112

The information below is about J3_5J7L_053

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76475.2

Basepair signature

cWW-tWH-F-tHS-cWW-cWW-F-cWS-cWS-cWW

Number of instances in this motif group

2

Unit IDs

8SYL|1|a|C|990
8SYL|1|a|U|991
8SYL|1|a|U|992
8SYL|1|a|G|993
8SYL|1|a|A|994
8SYL|1|a|C|995
8SYL|1|a|A|996
8SYL|1|a|U|997
*
8SYL|1|a|A|1044
8SYL|1|a|C|1045
8SYL|1|a|A|1046
8SYL|1|a|G|1047
*
8SYL|1|a|C|1210
8SYL|1|a|U|1211
8SYL|1|a|U|1212
8SYL|1|a|A|1213
8SYL|1|a|C|1214
8SYL|1|a|G|1215

Current chains

Chain a

16S Ribosomal RNA

Nearby chains

Chain n

30S ribosomal protein S14