J3_8T2Z_029

3D structure

PDB id

8T2Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypomethylated yeast 80S bound with cycloheximide, P-site tRNA, and A-site tRNA, messenger RNA, POST

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

AGAUAAAAAAUCAAUG*CUCUUUG*CAU

Length

26 nucleotides

Bulged bases

8T2Z|1|B5|A|217, 8T2Z|1|B5|A|218, 8T2Z|1|B5|U|223, 8T2Z|1|B5|U|238, 8T2Z|1|B5|U|240

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8T2Z|1|B5|A|213
8T2Z|1|B5|G|214
8T2Z|1|B5|A|215
8T2Z|1|B5|U|216
8T2Z|1|B5|A|217
8T2Z|1|B5|A|218
8T2Z|1|B5|A|219
8T2Z|1|B5|A|220
8T2Z|1|B5|A|221
8T2Z|1|B5|A|222
8T2Z|1|B5|U|223
8T2Z|1|B5|C|224
8T2Z|1|B5|A|225
8T2Z|1|B5|A|226
8T2Z|1|B5|U|227
8T2Z|1|B5|G|228
*
8T2Z|1|B5|C|237
8T2Z|1|B5|U|238
8T2Z|1|B5|C|239
8T2Z|1|B5|U|240
8T2Z|1|B5|U|241
8T2Z|1|B5|U|242
8T2Z|1|B5|G|243
*
8T2Z|1|B5|C|250
8T2Z|1|B5|A|251
8T2Z|1|B5|U|252

Current chains

Chain B5

18S rRNA

Nearby chains

Chain BE

40S ribosomal protein S4-A

Chain BG

40S ribosomal protein S6-A

Chain BL

40S ribosomal protein S11-A