3D structure

PDB id
8T30 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Hypomethylated yeast 80S bound with cycloheximide, unmodified U2921, mid rotated
Experimental method
ELECTRON MICROSCOPY
Resolution
2.88 Å

Loop

Sequence
GAC*GCUAAGGAGUG*CUCAC
Length
19 nucleotides
Bulged bases
8T30|1|A1|U|1258, 8T30|1|A1|A|1259, 8T30|1|A1|A|1260, 8T30|1|A1|A|1263, 8T30|1|A1|C|1277, 8T30|1|A1|A|1278
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

8T30|1|A1|G|1230
8T30|1|A1|A|1231
8T30|1|A1|C|1232
*
8T30|1|A1|G|1256
8T30|1|A1|C|1257
8T30|1|A1|U|1258
8T30|1|A1|A|1259
8T30|1|A1|A|1260
8T30|1|A1|G|1261
8T30|1|A1|G|1262
8T30|1|A1|A|1263
8T30|1|A1|G|1264
8T30|1|A1|U|1265
8T30|1|A1|G|1266
*
8T30|1|A1|C|1275
8T30|1|A1|U|1276
8T30|1|A1|C|1277
8T30|1|A1|A|1278
8T30|1|A1|C|1279

Current chains

Chain A1
25S rRNA

Nearby chains

No other chains within 10Å

Coloring options:

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