J3_8T30_019
3D structure
- PDB id
- 8T30 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Hypomethylated yeast 80S bound with cycloheximide, unmodified U2921, mid rotated
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.88 Å
Loop
- Sequence
- AGCUG*CACGUUCUAGCAUUCAAG*UGAU
- Length
- 27 nucleotides
- Bulged bases
- 8T30|1|A1|G|2549, 8T30|1|A1|U|2550, 8T30|1|A1|U|2551, 8T30|1|A1|C|2552, 8T30|1|A1|U|2553, 8T30|1|A1|A|2554, 8T30|1|A1|C|2560
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8T30|1|A1|A|2529
8T30|1|A1|G|2530
8T30|1|A1|C|2531
8T30|1|A1|U|2532
8T30|1|A1|G|2533
*
8T30|1|A1|C|2546
8T30|1|A1|A|2547
8T30|1|A1|C|2548
8T30|1|A1|G|2549
8T30|1|A1|U|2550
8T30|1|A1|U|2551
8T30|1|A1|C|2552
8T30|1|A1|U|2553
8T30|1|A1|A|2554
8T30|1|A1|G|2555
8T30|1|A1|C|2556
8T30|1|A1|A|2557
8T30|1|A1|U|2558
8T30|1|A1|U|2559
8T30|1|A1|C|2560
8T30|1|A1|A|2561
8T30|1|A1|A|2562
8T30|1|A1|G|2563
*
8T30|1|A1|U|2578
8T30|1|A1|G|2579
8T30|1|A1|A|2580
8T30|1|A1|U|2581
Current chains
- Chain A1
- 25S rRNA
Nearby chains
- Chain AA
- 60S ribosomal protein L2-A
- Chain AG
- 60S ribosomal protein L8-A
- Chain AX
- 60S ribosomal protein L25
- Chain AZ
- 60S ribosomal protein L27-A
- Chain Ac
- 60S ribosomal protein L30
- Chain Ag
- 60S ribosomal protein L34-A
- Chain Ap
- 60S ribosomal protein L43-A
- Chain BB
- RPS1A isoform 1
Coloring options: